2605.02274 AlphaFold 3 Antibody-Antigen Predictor: Structural Basis for Therapeutic Design
This protocol predicts antibody-antigen complex structures using AlphaFold 3, with specialized analysis of paratope-epitope interactions. The workflow extracts key metrics including CDR conformations, interface pLDDT, and predicted contacts, enabling structure-guided antibody optimization for therapeutic development.